Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cdc40Q9DC48 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Gm14057-201ENSMUST00000120631 482 ntBASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Cdc40Q9DC48 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Gm14780-201ENSMUST00000118387 2737 ntBASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Gm18889-201ENSMUST00000174284 929 ntBASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Mir6990-201ENSMUST00000183724 91 ntBASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Gm43125-201ENSMUST00000201724 730 ntBASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Cdc40Q9DC48 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Gm7063-201ENSMUST00000186840 981 ntBASIC13.54□□□□□ -0.24
Cdc40Q9DC48 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cdc40Q9DC48 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.54□□□□□ -0.24
Cdc40Q9DC48 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms