Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Clp1Q99LI9 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.32■□□□□ 0.04
Clp1Q99LI9 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.32■□□□□ 0.04
Clp1Q99LI9 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Gm27528-202ENSMUST00000222916 2012 ntBASIC15.32■□□□□ 0.04
Clp1Q99LI9 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clp1Q99LI9 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Gm11839-201ENSMUST00000120647 1953 ntBASIC15.31■□□□□ 0.04
Clp1Q99LI9 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Gm5279-201ENSMUST00000199575 745 ntBASIC15.31■□□□□ 0.04
Clp1Q99LI9 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clp1Q99LI9 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Gm11425-201ENSMUST00000119608 498 ntBASIC15.3■□□□□ 0.04
Clp1Q99LI9 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Gm11434-201ENSMUST00000122379 629 ntBASIC15.3■□□□□ 0.04
Clp1Q99LI9 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.3■□□□□ 0.04
Clp1Q99LI9 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Gm9396-201ENSMUST00000076703 567 ntBASIC15.3■□□□□ 0.04
Clp1Q99LI9 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clp1Q99LI9 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Gm6007-201ENSMUST00000208170 823 ntBASIC15.29■□□□□ 0.04
Clp1Q99LI9 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Clp1Q99LI9 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.28■□□□□ 0.04
Clp1Q99LI9 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.28■□□□□ 0.04
Clp1Q99LI9 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Clp1Q99LI9 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Clp1Q99LI9 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.28■□□□□ 0.04
Clp1Q99LI9 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms