Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Rbfox2-208ENSMUST00000227930 1218 ntBASIC17.22■□□□□ 0.35
Trim56Q80VI1 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim56Q80VI1 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Gm28630-201ENSMUST00000187806 498 ntBASIC17.21■□□□□ 0.35
Trim56Q80VI1 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim56Q80VI1 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Gm27618-201ENSMUST00000183671 60 ntBASIC17.2■□□□□ 0.34
Trim56Q80VI1 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 AC124732.2-201ENSMUST00000221977 316 ntBASIC17.2■□□□□ 0.34
Trim56Q80VI1 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.2■□□□□ 0.34
Trim56Q80VI1 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim56Q80VI1 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms