Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Gm6222-201ENSMUST00000120787 396 ntBASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Gm27680-201ENSMUST00000184192 160 ntBASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Gm7063-201ENSMUST00000186840 981 ntBASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ubfd1Q78JW9 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Mir7684-201ENSMUST00000183858 60 ntBASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubfd1Q78JW9 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubfd1Q78JW9 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms