Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim40Q3UWA4 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Mir7071-201ENSMUST00000184847 69 ntBASIC13.71□□□□□ -0.21
Trim40Q3UWA4 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim40Q3UWA4 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Trim40Q3UWA4 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim40Q3UWA4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim40Q3UWA4 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Gm13836-201ENSMUST00000121159 501 ntBASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Gm12497-201ENSMUST00000138778 237 ntBASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 AC108846.1-201ENSMUST00000214531 513 ntBASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim40Q3UWA4 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim40Q3UWA4 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim40Q3UWA4 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim40Q3UWA4 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim40Q3UWA4 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms