Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gm13365-201ENSMUST00000121188 973 ntBASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Upf3bQ3ULL6 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Gm5479-201ENSMUST00000160578 435 ntBASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Gm18737-201ENSMUST00000173594 937 ntBASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Olfr286-202ENSMUST00000205305 969 ntBASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Upf3bQ3ULL6 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Gm18889-201ENSMUST00000174284 929 ntBASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms