Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Gm4899-201ENSMUST00000178708 719 ntBASIC14.17□□□□□ -0.14
Usp39Q3TIX9 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Gm18246-201ENSMUST00000221023 728 ntBASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Ndufaf2-202ENSMUST00000223734 556 ntBASIC14.17□□□□□ -0.14
Usp39Q3TIX9 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.17□□□□□ -0.14
Usp39Q3TIX9 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp39Q3TIX9 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Gm27628-201ENSMUST00000184911 107 ntBASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp39Q3TIX9 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gm23935-201ENSMUST00000102303 57 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gm24270-201ENSMUST00000102326 57 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gm24245-201ENSMUST00000157318 57 ntBASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp39Q3TIX9 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Usp39Q3TIX9 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Usp39Q3TIX9 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Usp39Q3TIX9 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms