Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Sox3P53784 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sox3P53784 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Gm7488-201ENSMUST00000117148 684 ntBASIC14.02□□□□□ -0.17
Sox3P53784 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.02□□□□□ -0.17
Sox3P53784 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC14.02□□□□□ -0.17
Sox3P53784 Cdk7-205ENSMUST00000225990 1159 ntBASIC14.02□□□□□ -0.17
Sox3P53784 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.02□□□□□ -0.17
Sox3P53784 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Sox3P53784 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sox3P53784 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Sox3P53784 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Gm9385-201ENSMUST00000117563 472 ntBASIC14.01□□□□□ -0.17
Sox3P53784 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.01□□□□□ -0.17
Sox3P53784 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.01□□□□□ -0.17
Sox3P53784 Gm9794-201ENSMUST00000202370 423 ntBASIC14.01□□□□□ -0.17
Sox3P53784 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Sox3P53784 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox3P53784 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14□□□□□ -0.17
Sox3P53784 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Gm45504-201ENSMUST00000211407 2107 ntBASIC14□□□□□ -0.17
Sox3P53784 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14□□□□□ -0.17
Sox3P53784 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14□□□□□ -0.17
Sox3P53784 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14□□□□□ -0.17
Sox3P53784 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sox3P53784 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14□□□□□ -0.17
Sox3P53784 Gm7730-201ENSMUST00000212486 454 ntBASIC14□□□□□ -0.17
Sox3P53784 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Sox3P53784 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox3P53784 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14□□□□□ -0.17
Sox3P53784 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox3P53784 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms