Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC11.97□□□□□ -0.49
Sdc1P18828 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Gm21814-202ENSMUST00000203277 873 ntBASIC11.97□□□□□ -0.49
Sdc1P18828 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC11.97□□□□□ -0.49
Sdc1P18828 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Sdc1P18828 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC11.96□□□□□ -0.49
Sdc1P18828 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Zkscan4-202ENSMUST00000225845 1506 ntBASIC11.96□□□□□ -0.49
Sdc1P18828 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Sdc1P18828 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Sdc1P18828 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sdc1P18828 Gm18041-201ENSMUST00000218210 618 ntBASIC11.96□□□□□ -0.49
Sdc1P18828 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sdc1P18828 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC11.96□□□□□ -0.5
Sdc1P18828 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sdc1P18828 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC11.95□□□□□ -0.5
Sdc1P18828 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms