Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Col1a1P11087 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
Col1a1P11087 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC16.89■□□□□ 0.29
Col1a1P11087 Mir1247-201ENSMUST00000116706 82 ntBASIC16.89■□□□□ 0.29
Col1a1P11087 Gm9728-201ENSMUST00000200197 1055 ntBASIC16.89■□□□□ 0.29
Col1a1P11087 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Col1a1P11087 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col1a1P11087 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Col1a1P11087 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC16.88■□□□□ 0.29
Col1a1P11087 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC16.88■□□□□ 0.29
Col1a1P11087 Gm19078-201ENSMUST00000206311 727 ntBASIC16.88■□□□□ 0.29
Col1a1P11087 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.88■□□□□ 0.29
Col1a1P11087 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.88■□□□□ 0.29
Col1a1P11087 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Col1a1P11087 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
Col1a1P11087 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Col1a1P11087 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col1a1P11087 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col1a1P11087 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Gm11524-201ENSMUST00000119349 807 ntBASIC16.87■□□□□ 0.29
Col1a1P11087 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC16.87■□□□□ 0.29
Col1a1P11087 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.87■□□□□ 0.29
Col1a1P11087 Gm15429-201ENSMUST00000151268 798 ntBASIC16.87■□□□□ 0.29
Col1a1P11087 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16.87■□□□□ 0.29
Col1a1P11087 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col1a1P11087 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col1a1P11087 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC16.87■□□□□ 0.29
Col1a1P11087 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Col1a1P11087 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
Col1a1P11087 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.87■□□□□ 0.29
Col1a1P11087 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col1a1P11087 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Gm44608-201ENSMUST00000206827 855 ntBASIC16.86■□□□□ 0.29
Col1a1P11087 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Col1a1P11087 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col1a1P11087 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col1a1P11087 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms