Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm10313-201ENSMUST00000095320 1002 ntBASIC11.4□□□□□ -0.58
Hoxd3P09027 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC11.4□□□□□ -0.59
Hoxd3P09027 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Hoxd3P09027 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Gm42934-201ENSMUST00000196920 1345 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Alg13-207ENSMUST00000149330 479 ntTSL 2 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Auts2-212ENSMUST00000178555 309 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 Gm9824-201ENSMUST00000178707 561 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Klk2-ps-201ENSMUST00000205342 571 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC11.39□□□□□ -0.59
Hoxd3P09027 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 AC159114.1-201ENSMUST00000220349 266 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC11.39□□□□□ -0.59
Hoxd3P09027 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Hoxd3P09027 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Hoxd3P09027 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC11.38□□□□□ -0.59
Hoxd3P09027 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC11.38□□□□□ -0.59
Hoxd3P09027 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Hoxd3P09027 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm22175-201ENSMUST00000175007 78 ntBASIC11.38□□□□□ -0.59
Hoxd3P09027 4930513D17Rik-203ENSMUST00000202800 1159 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC11.38□□□□□ -0.59
Hoxd3P09027 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hoxd3P09027 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms