Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim55G3X8Y1 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Trim55G3X8Y1 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Trim55G3X8Y1 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim55G3X8Y1 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim55G3X8Y1 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.04■□□□□ -0
Trim55G3X8Y1 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Timm23-208ENSMUST00000226683 750 ntBASIC15.04■□□□□ -0
Trim55G3X8Y1 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim55G3X8Y1 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim55G3X8Y1 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.03■□□□□ -0
Trim55G3X8Y1 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC15.03■□□□□ -0
Trim55G3X8Y1 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim55G3X8Y1 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.03■□□□□ -0
Trim55G3X8Y1 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim55G3X8Y1 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC15.03■□□□□ -0
Trim55G3X8Y1 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim55G3X8Y1 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.02■□□□□ -0
Trim55G3X8Y1 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Trim55G3X8Y1 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC15.02■□□□□ -0
Trim55G3X8Y1 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC15.02■□□□□ -0
Trim55G3X8Y1 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.02■□□□□ -0
Trim55G3X8Y1 Gm6257-201ENSMUST00000163864 910 ntBASIC15.02■□□□□ -0
Trim55G3X8Y1 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Trim55G3X8Y1 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim55G3X8Y1 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim55G3X8Y1 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim55G3X8Y1 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms