Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.38■□□□□ 0.21
Smc1aQ9CU62 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Smc1aQ9CU62 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.37■□□□□ 0.21
Smc1aQ9CU62 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Smc1aQ9CU62 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Smc1aQ9CU62 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms