Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim60Q8VI40 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim60Q8VI40 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Trim60Q8VI40 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim60Q8VI40 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.15■□□□□ 0.02
Trim60Q8VI40 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gm8749-201ENSMUST00000117737 331 ntBASIC15.15■□□□□ 0.02
Trim60Q8VI40 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gm43935-201ENSMUST00000203569 1050 ntBASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.15■□□□□ 0.02
Trim60Q8VI40 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trim60Q8VI40 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Gm7862-201ENSMUST00000121461 292 ntBASIC15.14■□□□□ 0.01
Trim60Q8VI40 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC15.14■□□□□ 0.01
Trim60Q8VI40 Gm17971-201ENSMUST00000190239 806 ntBASIC15.14■□□□□ 0.01
Trim60Q8VI40 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Trim60Q8VI40 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm24589-201ENSMUST00000116692 94 ntBASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm13464-201ENSMUST00000119418 935 ntBASIC15.13■□□□□ 0.01
Trim60Q8VI40 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm4899-201ENSMUST00000178708 719 ntBASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.13■□□□□ 0.01
Trim60Q8VI40 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.13■□□□□ 0.01
Trim60Q8VI40 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Trim60Q8VI40 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.12■□□□□ 0.01
Trim60Q8VI40 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim60Q8VI40 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms