Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 AC139054.1-201ENSMUST00000226898 1598 ntBASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Gm13559-201ENSMUST00000120476 863 ntBASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9Q8VC31 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9Q8VC31 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Grk6-205ENSMUST00000224653 2976 ntBASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Ccdc9Q8VC31 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Gm45743-201ENSMUST00000212701 2795 ntBASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Ccdc9Q8VC31 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms