Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
Nup88Q8CEC0 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC17.27■□□□□ 0.35
Nup88Q8CEC0 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nup88Q8CEC0 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nup88Q8CEC0 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Nup88Q8CEC0 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Gm43205-201ENSMUST00000198622 1968 ntBASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Nup88Q8CEC0 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.25■□□□□ 0.35
Nup88Q8CEC0 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Gm44872-201ENSMUST00000207864 420 ntBASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms