Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx58Q6Q899 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Sybu-209ENSMUST00000228639 4113 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Gm14719-201ENSMUST00000121891 340 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Gm46209-201ENSMUST00000217912 553 ntBASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx58Q6Q899 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Gm9252-201ENSMUST00000172364 1602 ntBASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx58Q6Q899 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Gm27838-201ENSMUST00000184829 128 ntBASIC18.04■□□□□ 0.48
Ddx58Q6Q899 AA619741-201ENSMUST00000195095 646 ntBASIC18.04■□□□□ 0.48
Ddx58Q6Q899 AC132863.2-201ENSMUST00000226643 799 ntBASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx58Q6Q899 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms