Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC18.89■□□□□ 0.61
Trim28Q62318 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC18.89■□□□□ 0.61
Trim28Q62318 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trim28Q62318 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC18.89■□□□□ 0.61
Trim28Q62318 Ighv1-25-201ENSMUST00000195638 345 ntBASIC18.89■□□□□ 0.61
Trim28Q62318 AC153872.1-201ENSMUST00000199539 128 ntBASIC18.89■□□□□ 0.61
Trim28Q62318 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC18.89■□□□□ 0.61
Trim28Q62318 AC135669.1-201ENSMUST00000213585 412 ntBASIC18.89■□□□□ 0.61
Trim28Q62318 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Trim28Q62318 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC18.89■□□□□ 0.61
Trim28Q62318 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Trim28Q62318 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trim28Q62318 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC18.88■□□□□ 0.61
Trim28Q62318 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim28Q62318 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Gtpbp10-211ENSMUST00000198799 648 ntBASIC18.88■□□□□ 0.61
Trim28Q62318 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC18.88■□□□□ 0.61
Trim28Q62318 Arhgef33-209ENSMUST00000225223 714 ntBASIC18.88■□□□□ 0.61
Trim28Q62318 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC18.88■□□□□ 0.61
Trim28Q62318 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim28Q62318 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC18.88■□□□□ 0.61
Trim28Q62318 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Gm37728-201ENSMUST00000195025 2292 ntBASIC18.88■□□□□ 0.61
Trim28Q62318 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim28Q62318 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Gm16425-201ENSMUST00000118143 3130 ntBASIC18.87■□□□□ 0.61
Trim28Q62318 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Trim28Q62318 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trim28Q62318 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC18.87■□□□□ 0.61
Trim28Q62318 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC18.87■□□□□ 0.61
Trim28Q62318 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trim28Q62318 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC18.87■□□□□ 0.61
Trim28Q62318 Gm44608-201ENSMUST00000206827 855 ntBASIC18.87■□□□□ 0.61
Trim28Q62318 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.87■□□□□ 0.61
Trim28Q62318 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Trim28Q62318 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim28Q62318 Gm9768-201ENSMUST00000206007 2861 ntBASIC18.87■□□□□ 0.61
Trim28Q62318 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trim28Q62318 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Gm12859-201ENSMUST00000117834 427 ntBASIC18.86■□□□□ 0.61
Trim28Q62318 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC18.86■□□□□ 0.61
Trim28Q62318 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC18.86■□□□□ 0.61
Trim28Q62318 AL593843.1-201ENSMUST00000195891 145 ntBASIC18.86■□□□□ 0.61
Trim28Q62318 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC18.86■□□□□ 0.61
Trim28Q62318 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim28Q62318 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trim28Q62318 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim28Q62318 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms