Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gm11543-201ENSMUST00000120758 370 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gm11745-201ENSMUST00000121669 448 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Rprl2-201ENSMUST00000157150 290 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gm18057-201ENSMUST00000208220 503 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Carlr-201ENSMUST00000181515 2574 ntBASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm27702-201ENSMUST00000184512 56 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm2451-201ENSMUST00000199447 999 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm10290-201ENSMUST00000200451 999 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Upf3bQ3ULL6 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Gm6736-201ENSMUST00000166583 948 ntBASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Gm27920-201ENSMUST00000183953 96 ntBASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Upf3bQ3ULL6 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Upf3bQ3ULL6 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Upf3bQ3ULL6 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms