Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Gm15823-201ENSMUST00000064305 670 ntBASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 BC001981-202ENSMUST00000191393 1545 ntBASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Gm9797-201ENSMUST00000052902 613 ntBASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 AC093043.3-201ENSMUST00000226531 2273 ntBASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Upf3aQ3ULJ3 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3aQ3ULJ3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm12138-201ENSMUST00000122180 951 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm10766-202ENSMUST00000194123 606 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm43433-201ENSMUST00000196573 481 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.33■□□□□ 0.04
Upf3aQ3ULJ3 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Gm12091-201ENSMUST00000146791 830 ntBASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Gm37917-201ENSMUST00000194711 392 ntBASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms