Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col28a1Q2UY11 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm25990-201ENSMUST00000102440 86 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm13418-201ENSMUST00000119097 944 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm15173-201ENSMUST00000122049 433 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm43767-201ENSMUST00000198933 381 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Gm7506-201ENSMUST00000207758 815 ntBASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col28a1Q2UY11 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col28a1Q2UY11 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col28a1Q2UY11 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms