Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb1P63158 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb1P63158 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb1P63158 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb1P63158 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb1P63158 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Mir5131-201ENSMUST00000175426 93 ntBASIC16.1■□□□□ 0.17
Hmgb1P63158 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.1■□□□□ 0.17
Hmgb1P63158 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb1P63158 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb1P63158 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm14451-201ENSMUST00000121581 1542 ntBASIC16.09■□□□□ 0.17
Hmgb1P63158 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.09■□□□□ 0.17
Hmgb1P63158 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb1P63158 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb1P63158 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Hmgb1P63158 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Hmgb1P63158 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Hmgb1P63158 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.08■□□□□ 0.17
Hmgb1P63158 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Hmgb1P63158 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
Hmgb1P63158 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Hmgb1P63158 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Hmgb1P63158 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.08■□□□□ 0.16
Hmgb1P63158 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb1P63158 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.08■□□□□ 0.16
Hmgb1P63158 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms