Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx1P13297 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
Msx1P13297 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Gm12151-201ENSMUST00000121374 290 ntBASIC13.9□□□□□ -0.18
Msx1P13297 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.9□□□□□ -0.18
Msx1P13297 Gm2272-201ENSMUST00000194903 582 ntBASIC13.9□□□□□ -0.18
Msx1P13297 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.9□□□□□ -0.18
Msx1P13297 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 AC142191.1-201ENSMUST00000219217 699 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx1P13297 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx1P13297 Gm5357-201ENSMUST00000212720 1924 ntBASIC13.9□□□□□ -0.18
Msx1P13297 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Msx1P13297 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Msx1P13297 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Msx1P13297 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Msx1P13297 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Msx1P13297 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
Msx1P13297 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Msx1P13297 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Gm13263-201ENSMUST00000121271 838 ntBASIC13.89□□□□□ -0.19
Msx1P13297 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC13.89□□□□□ -0.19
Msx1P13297 Id2-201ENSMUST00000020974 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.89□□□□□ -0.19
Msx1P13297 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Msx1P13297 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 AC107452.3-201ENSMUST00000228807 1308 ntBASIC13.89□□□□□ -0.19
Msx1P13297 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx1P13297 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx1P13297 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
Msx1P13297 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx1P13297 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.88□□□□□ -0.19
Msx1P13297 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.88□□□□□ -0.19
Msx1P13297 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.88□□□□□ -0.19
Msx1P13297 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx1P13297 Wdyhv1-203ENSMUST00000226889 394 ntBASIC13.88□□□□□ -0.19
Msx1P13297 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.88□□□□□ -0.19
Msx1P13297 Gm10154-201ENSMUST00000084445 354 ntBASIC13.88□□□□□ -0.19
Msx1P13297 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Msx1P13297 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx1P13297 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.88□□□□□ -0.19
Msx1P13297 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.88□□□□□ -0.19
Msx1P13297 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx1P13297 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms