Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.83■□□□□ 0.12
RaraP11416 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.83■□□□□ 0.12
RaraP11416 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
RaraP11416 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.83■□□□□ 0.12
RaraP11416 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
RaraP11416 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
RaraP11416 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RaraP11416 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
RaraP11416 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
RaraP11416 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
RaraP11416 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Mir5131-201ENSMUST00000175426 93 ntBASIC15.82■□□□□ 0.12
RaraP11416 Gm28659-201ENSMUST00000188013 759 ntBASIC15.82■□□□□ 0.12
RaraP11416 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.82■□□□□ 0.12
RaraP11416 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC15.82■□□□□ 0.12
RaraP11416 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC15.82■□□□□ 0.12
RaraP11416 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
RaraP11416 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.82■□□□□ 0.12
RaraP11416 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RaraP11416 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RaraP11416 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
RaraP11416 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RaraP11416 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.81■□□□□ 0.12
RaraP11416 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RaraP11416 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC15.81■□□□□ 0.12
RaraP11416 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RaraP11416 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
RaraP11416 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.81■□□□□ 0.12
RaraP11416 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC15.81■□□□□ 0.12
RaraP11416 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.81■□□□□ 0.12
RaraP11416 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.81■□□□□ 0.12
RaraP11416 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
RaraP11416 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
RaraP11416 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RaraP11416 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.8■□□□□ 0.12
RaraP11416 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.8■□□□□ 0.12
RaraP11416 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.8■□□□□ 0.12
RaraP11416 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
RaraP11416 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms