Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col1a1P11087 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Col1a1P11087 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Gm14660-201ENSMUST00000119809 575 ntBASIC16.93■□□□□ 0.3
Col1a1P11087 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
Col1a1P11087 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC16.93■□□□□ 0.3
Col1a1P11087 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Gm10478-201ENSMUST00000084451 396 ntBASIC16.93■□□□□ 0.3
Col1a1P11087 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col1a1P11087 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Col1a1P11087 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.93■□□□□ 0.3
Col1a1P11087 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
Col1a1P11087 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col1a1P11087 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col1a1P11087 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col1a1P11087 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col1a1P11087 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.92■□□□□ 0.3
Col1a1P11087 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Gm11814-201ENSMUST00000119515 929 ntBASIC16.92■□□□□ 0.3
Col1a1P11087 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
Col1a1P11087 Trav4d-2-201ENSMUST00000120914 335 ntBASIC16.92■□□□□ 0.3
Col1a1P11087 Gm17420-201ENSMUST00000164753 153 ntBASIC16.92■□□□□ 0.3
Col1a1P11087 Gm37424-201ENSMUST00000191727 561 ntBASIC16.92■□□□□ 0.3
Col1a1P11087 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.92■□□□□ 0.3
Col1a1P11087 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col1a1P11087 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC16.91■□□□□ 0.3
Col1a1P11087 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.91■□□□□ 0.3
Col1a1P11087 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.91■□□□□ 0.3
Col1a1P11087 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.91■□□□□ 0.3
Col1a1P11087 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col1a1P11087 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Gm38230-201ENSMUST00000193572 1159 ntBASIC16.91■□□□□ 0.3
Col1a1P11087 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Col1a1P11087 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col1a1P11087 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.9■□□□□ 0.3
Col1a1P11087 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.9■□□□□ 0.3
Col1a1P11087 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC16.9■□□□□ 0.3
Col1a1P11087 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.9■□□□□ 0.3
Col1a1P11087 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Gm42693-201ENSMUST00000196779 631 ntBASIC16.9■□□□□ 0.3
Col1a1P11087 Gm7287-201ENSMUST00000205267 602 ntBASIC16.9■□□□□ 0.3
Col1a1P11087 Gm18905-201ENSMUST00000205454 928 ntBASIC16.9■□□□□ 0.3
Col1a1P11087 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC16.9■□□□□ 0.3
Col1a1P11087 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
Col1a1P11087 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col1a1P11087 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms