Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc3Q9D6Y1 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm6415-201ENSMUST00000118488 348 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm2810-201ENSMUST00000118681 990 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm16026-204ENSMUST00000162652 683 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm9824-201ENSMUST00000178707 561 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm38225-201ENSMUST00000194001 393 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc3Q9D6Y1 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Celf4-206ENSMUST00000224553 1729 ntBASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc3Q9D6Y1 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc3Q9D6Y1 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Gm13223-201ENSMUST00000118609 747 ntBASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Gm12151-201ENSMUST00000121374 290 ntBASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Gm23547-201ENSMUST00000158210 271 ntBASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms