Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.03■□□□□ -0
Vps28Q9D1C8 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
Vps28Q9D1C8 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.03■□□□□ -0
Vps28Q9D1C8 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps28Q9D1C8 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm12134-201ENSMUST00000122109 520 ntBASIC15.02■□□□□ -0
Vps28Q9D1C8 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Gm43474-201ENSMUST00000196415 774 ntBASIC15.02■□□□□ -0
Vps28Q9D1C8 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.02■□□□□ -0
Vps28Q9D1C8 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps28Q9D1C8 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.02■□□□□ -0
Vps28Q9D1C8 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Vps28Q9D1C8 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Gm45504-201ENSMUST00000211407 2107 ntBASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Gm18737-201ENSMUST00000173594 937 ntBASIC15.01□□□□□ -0.01
Vps28Q9D1C8 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Gm5312-201ENSMUST00000203728 547 ntBASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps28Q9D1C8 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms