Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Gm6443-201ENSMUST00000203599 874 ntBASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Ddx56Q9D0R4 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm15427-201ENSMUST00000117288 531 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm15467-201ENSMUST00000120582 445 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Olfr286-202ENSMUST00000205305 969 ntBASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ddx56Q9D0R4 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Gm17271-201ENSMUST00000165535 355 ntBASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Rpph1-201ENSMUST00000175096 319 ntBASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ddx56Q9D0R4 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Gm14494-201ENSMUST00000118786 435 ntBASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Gm27525-201ENSMUST00000184465 107 ntBASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ddx56Q9D0R4 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms