Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9Q8VC31 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gm14371-201ENSMUST00000138925 1518 ntBASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Acot6-202ENSMUST00000222921 3622 ntBASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gm13474-201ENSMUST00000122466 815 ntBASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gm2274-201ENSMUST00000184539 609 ntBASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9Q8VC31 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9Q8VC31 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9Q8VC31 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc9Q8VC31 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc9Q8VC31 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc9Q8VC31 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm11539-201ENSMUST00000119837 557 ntBASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm13436-201ENSMUST00000120418 567 ntBASIC17.64■□□□□ 0.41
Ccdc9Q8VC31 Gm16061-201ENSMUST00000122167 857 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms