Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm14822-201ENSMUST00000122247 291 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm9726-201ENSMUST00000180321 678 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm6944-201ENSMUST00000182449 1006 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm2756-201ENSMUST00000195851 400 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.7■□□□□ 0.1
Upf3bQ3ULL6 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Gm6973-201ENSMUST00000117080 721 ntBASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Gm27494-201ENSMUST00000184735 189 ntBASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Upf3bQ3ULL6 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Mir1895-201ENSMUST00000122615 79 ntBASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.68■□□□□ 0.1
Upf3bQ3ULL6 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Upf3bQ3ULL6 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms