Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.32□□□□□ -0.12
Col9a1Q05722 Gm37835-201ENSMUST00000193305 361 ntBASIC14.32□□□□□ -0.12
Col9a1Q05722 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 CT009713.1-201ENSMUST00000224828 853 ntBASIC14.32□□□□□ -0.12
Col9a1Q05722 AC140293.1-201ENSMUST00000225626 1247 ntBASIC14.32□□□□□ -0.12
Col9a1Q05722 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col9a1Q05722 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.32□□□□□ -0.12
Col9a1Q05722 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col9a1Q05722 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm14659-201ENSMUST00000117667 843 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm22923-201ENSMUST00000174952 110 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm37604-201ENSMUST00000191749 1272 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm5279-201ENSMUST00000199575 745 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Ndufc1-201ENSMUST00000038108 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.31□□□□□ -0.12
Col9a1Q05722 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.31□□□□□ -0.12
Col9a1Q05722 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col9a1Q05722 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm12928-201ENSMUST00000117115 573 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm12585-201ENSMUST00000117307 290 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Vmn1r185-201ENSMUST00000171039 1144 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm43049-202ENSMUST00000198942 559 ntTSL 2 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm43452-201ENSMUST00000201873 991 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm45072-201ENSMUST00000208673 929 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 AC154616.1-201ENSMUST00000226995 804 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Cxcl13-201ENSMUST00000023840 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Col9a1Q05722 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.3□□□□□ -0.12
Col9a1Q05722 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col9a1Q05722 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.3□□□□□ -0.12
Col9a1Q05722 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms