Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx58Q6Q899 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx58Q6Q899 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx58Q6Q899 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Mir6977-201ENSMUST00000184960 64 ntBASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Gm16476-201ENSMUST00000221544 139 ntBASIC18.14■□□□□ 0.49
Ddx58Q6Q899 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx58Q6Q899 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Dupd1-202ENSMUST00000224735 548 ntBASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.13■□□□□ 0.49
Ddx58Q6Q899 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Gm45453-201ENSMUST00000211758 853 ntBASIC18.12■□□□□ 0.49
Ddx58Q6Q899 AC125206.2-201ENSMUST00000217454 574 ntBASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Gm5626-201ENSMUST00000222151 1058 ntBASIC18.12■□□□□ 0.49
Ddx58Q6Q899 AC149588.3-201ENSMUST00000227515 150 ntBASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC18.12■□□□□ 0.49
Ddx58Q6Q899 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gm15653-201ENSMUST00000119247 907 ntBASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Mir1897-201ENSMUST00000122581 272 ntBASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gm27437-201ENSMUST00000183429 107 ntBASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ddx58Q6Q899 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms