Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 AC123645.1-201ENSMUST00000228469 605 ntBASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Trav8d-2Q5R1B6 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Gm18307-201ENSMUST00000206864 949 ntBASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trav8d-2Q5R1B6 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.21□□□□□ -0.14
Trav8d-2Q5R1B6 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Gm5279-201ENSMUST00000199575 745 ntBASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 AC121598.1-201ENSMUST00000228224 1019 ntBASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav8d-2Q5R1B6 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Gm43195-201ENSMUST00000200614 2332 ntBASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Gm45412-201ENSMUST00000210217 2275 ntBASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Gm12957-201ENSMUST00000117835 377 ntBASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Trav4d-2-201ENSMUST00000120914 335 ntBASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Mir1894-201ENSMUST00000122802 81 ntBASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav8d-2Q5R1B6 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms