Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Gm5264-201ENSMUST00000190584 848 ntBASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Col28a1Q2UY11 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col28a1Q2UY11 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col28a1Q2UY11 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms