Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col1a1P11087 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.01■□□□□ 0.31
Col1a1P11087 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC17.01■□□□□ 0.31
Col1a1P11087 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col1a1P11087 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Col1a1P11087 Gm42690-201ENSMUST00000197921 1836 ntBASIC17.01■□□□□ 0.31
Col1a1P11087 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17■□□□□ 0.31
Col1a1P11087 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17■□□□□ 0.31
Col1a1P11087 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC17■□□□□ 0.31
Col1a1P11087 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col1a1P11087 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC17■□□□□ 0.31
Col1a1P11087 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 AC125117.1-201ENSMUST00000228121 468 ntBASIC17■□□□□ 0.31
Col1a1P11087 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col1a1P11087 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col1a1P11087 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC17■□□□□ 0.31
Col1a1P11087 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col1a1P11087 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
Col1a1P11087 BC037039-201ENSMUST00000192003 2205 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Col1a1P11087 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 AC156560.2-201ENSMUST00000221232 264 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Gm13392-201ENSMUST00000117708 150 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 Gm15957-201ENSMUST00000118893 974 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 Gm12882-201ENSMUST00000121696 517 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.99■□□□□ 0.31
Col1a1P11087 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC16.99■□□□□ 0.31
Col1a1P11087 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.99■□□□□ 0.31
Col1a1P11087 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col1a1P11087 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col1a1P11087 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col1a1P11087 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.98■□□□□ 0.31
Col1a1P11087 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
Col1a1P11087 Gm45784-201ENSMUST00000188360 142 ntBASIC16.98■□□□□ 0.31
Col1a1P11087 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC16.98■□□□□ 0.31
Col1a1P11087 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Col1a1P11087 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col1a1P11087 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col1a1P11087 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.97■□□□□ 0.31
Col1a1P11087 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms