Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col4a1P02463 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Col4a1P02463 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Col4a1P02463 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.8■□□□□ 0.44
Col4a1P02463 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC17.8■□□□□ 0.44
Col4a1P02463 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col4a1P02463 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.79■□□□□ 0.44
Col4a1P02463 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col4a1P02463 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC17.79■□□□□ 0.44
Col4a1P02463 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Gm21470-201ENSMUST00000187680 696 ntBASIC17.79■□□□□ 0.44
Col4a1P02463 Gm8463-201ENSMUST00000208573 613 ntBASIC17.79■□□□□ 0.44
Col4a1P02463 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC17.79■□□□□ 0.44
Col4a1P02463 AC149294.4-201ENSMUST00000227870 882 ntBASIC17.79■□□□□ 0.44
Col4a1P02463 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col4a1P02463 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col4a1P02463 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col4a1P02463 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Col4a1P02463 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
Col4a1P02463 Gm28911-201ENSMUST00000188837 117 ntBASIC17.78■□□□□ 0.44
Col4a1P02463 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC17.78■□□□□ 0.44
Col4a1P02463 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col4a1P02463 Gm17795-201ENSMUST00000214505 757 ntBASIC17.78■□□□□ 0.44
Col4a1P02463 Gm19220-201ENSMUST00000222682 803 ntBASIC17.78■□□□□ 0.44
Col4a1P02463 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col4a1P02463 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col4a1P02463 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Col4a1P02463 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC17.77■□□□□ 0.44
Col4a1P02463 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
Col4a1P02463 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col4a1P02463 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Col4a1P02463 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC17.77■□□□□ 0.43
Col4a1P02463 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Col4a1P02463 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col4a1P02463 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Col4a1P02463 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.76■□□□□ 0.43
Col4a1P02463 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Gm42471-201ENSMUST00000201457 1865 ntBASIC17.76■□□□□ 0.43
Col4a1P02463 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col4a1P02463 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col4a1P02463 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 434.4 ms