Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gm12008-201ENSMUST00000117791 755 ntBASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gm11745-201ENSMUST00000121669 448 ntBASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ushbp1Q8R370 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm6226-201ENSMUST00000117765 1146 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm45612-201ENSMUST00000211320 160 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ushbp1Q8R370 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Trav13-3-201ENSMUST00000117226 336 ntBASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Ushbp1Q8R370 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ushbp1Q8R370 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Ushbp1Q8R370 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ushbp1Q8R370 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ushbp1Q8R370 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ushbp1Q8R370 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms