Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.37■□□□□ 0.37
Trim56Q80VI1 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm25948-201ENSMUST00000175334 112 ntBASIC17.36■□□□□ 0.37
Trim56Q80VI1 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.36■□□□□ 0.37
Trim56Q80VI1 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim56Q80VI1 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.35■□□□□ 0.37
Trim56Q80VI1 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.35■□□□□ 0.37
Trim56Q80VI1 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim56Q80VI1 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Gm13616-201ENSMUST00000120600 222 ntBASIC17.34■□□□□ 0.37
Trim56Q80VI1 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.34■□□□□ 0.37
Trim56Q80VI1 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trim56Q80VI1 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trim56Q80VI1 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim56Q80VI1 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim56Q80VI1 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trim56Q80VI1 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim56Q80VI1 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim56Q80VI1 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Gm7774-201ENSMUST00000200064 533 ntBASIC17.33■□□□□ 0.36
Trim56Q80VI1 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim56Q80VI1 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms