Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC19.02■□□□□ 0.64
Trim28Q62318 AC121804.3-201ENSMUST00000223420 295 ntBASIC19.02■□□□□ 0.64
Trim28Q62318 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Trim28Q62318 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Trim28Q62318 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Trim28Q62318 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Trim28Q62318 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim28Q62318 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim28Q62318 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim28Q62318 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Trim28Q62318 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 H2-Pa-201ENSMUST00000182803 626 ntBASIC19.01■□□□□ 0.63
Trim28Q62318 Gm44855-201ENSMUST00000205725 362 ntBASIC19.01■□□□□ 0.63
Trim28Q62318 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Trim28Q62318 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Hist1h2al-201ENSMUST00000091708 339 ntBASIC19.01■□□□□ 0.63
Trim28Q62318 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Gm3365-201ENSMUST00000216296 1480 ntBASIC19.01■□□□□ 0.63
Trim28Q62318 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim28Q62318 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC19.01■□□□□ 0.63
Trim28Q62318 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC19■□□□□ 0.63
Trim28Q62318 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC19■□□□□ 0.63
Trim28Q62318 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
Trim28Q62318 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC19■□□□□ 0.63
Trim28Q62318 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC19■□□□□ 0.63
Trim28Q62318 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC19■□□□□ 0.63
Trim28Q62318 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC19■□□□□ 0.63
Trim28Q62318 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trim28Q62318 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Trim28Q62318 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trim28Q62318 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.99■□□□□ 0.63
Trim28Q62318 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC18.99■□□□□ 0.63
Trim28Q62318 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC18.99■□□□□ 0.63
Trim28Q62318 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC18.99■□□□□ 0.63
Trim28Q62318 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.99■□□□□ 0.63
Trim28Q62318 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim28Q62318 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.98■□□□□ 0.63
Trim28Q62318 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trim28Q62318 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Trim28Q62318 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim28Q62318 Gm15957-201ENSMUST00000118893 974 ntBASIC18.98■□□□□ 0.63
Trim28Q62318 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC18.98■□□□□ 0.63
Trim28Q62318 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC18.98■□□□□ 0.63
Trim28Q62318 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Trim28Q62318 Gm6473-201ENSMUST00000188572 1210 ntBASIC18.98■□□□□ 0.63
Trim28Q62318 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms