Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col11a1Q61245 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Col11a1Q61245 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.2■□□□□ 0.18
Col11a1Q61245 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Gm8565-201ENSMUST00000183259 1014 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 Gm5370-201ENSMUST00000187187 574 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Zscan30-202ENSMUST00000224144 1458 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Gm12329-201ENSMUST00000120829 1007 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Gm38241-201ENSMUST00000192641 898 ntBASIC16.19■□□□□ 0.18
Col11a1Q61245 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC16.19■□□□□ 0.18
Col11a1Q61245 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col11a1Q61245 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Col11a1Q61245 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC16.18■□□□□ 0.18
Col11a1Q61245 Gm27847-201ENSMUST00000183711 107 ntBASIC16.18■□□□□ 0.18
Col11a1Q61245 Gm27375-201ENSMUST00000183799 107 ntBASIC16.18■□□□□ 0.18
Col11a1Q61245 Gm7619-201ENSMUST00000210649 1282 ntBASIC16.18■□□□□ 0.18
Col11a1Q61245 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Col11a1Q61245 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Col11a1Q61245 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col11a1Q61245 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm5187-201ENSMUST00000117317 991 ntBASIC16.17■□□□□ 0.18
Col11a1Q61245 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm44608-201ENSMUST00000206827 855 ntBASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm40466-201ENSMUST00000212174 422 ntBASIC16.17■□□□□ 0.18
Col11a1Q61245 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC16.17■□□□□ 0.18
Col11a1Q61245 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col11a1Q61245 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
Col11a1Q61245 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col11a1Q61245 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col11a1Q61245 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col11a1Q61245 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms