Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Gm13616-201ENSMUST00000120600 222 ntBASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Gm10253-201ENSMUST00000194270 940 ntBASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav6d-4Q5R1I0 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Gm15920-201ENSMUST00000118998 402 ntBASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Gm25948-201ENSMUST00000175334 112 ntBASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Gm38058-201ENSMUST00000194323 4368 ntBASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6d-4Q5R1I0 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gm25925-201ENSMUST00000158314 306 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gm5479-201ENSMUST00000160578 435 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
Trav6d-4Q5R1I0 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms