Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
Shmt1P50431 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Shmt1P50431 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Shmt1P50431 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Shmt1P50431 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Shmt1P50431 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.56■□□□□ 0.08
Shmt1P50431 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Mir449b-201ENSMUST00000104833 80 ntBASIC15.56■□□□□ 0.08
Shmt1P50431 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Gm13015-201ENSMUST00000118674 204 ntBASIC15.56■□□□□ 0.08
Shmt1P50431 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Shmt1P50431 Gm25948-201ENSMUST00000175334 112 ntBASIC15.56■□□□□ 0.08
Shmt1P50431 Gm38225-201ENSMUST00000194001 393 ntBASIC15.56■□□□□ 0.08
Shmt1P50431 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.56■□□□□ 0.08
Shmt1P50431 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Shmt1P50431 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.56■□□□□ 0.08
Shmt1P50431 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Shmt1P50431 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC15.55■□□□□ 0.08
Shmt1P50431 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Shmt1P50431 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.55■□□□□ 0.08
Shmt1P50431 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.55■□□□□ 0.08
Shmt1P50431 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Shmt1P50431 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.55■□□□□ 0.08
Shmt1P50431 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm9726-201ENSMUST00000180321 678 ntBASIC15.55■□□□□ 0.08
Shmt1P50431 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.55■□□□□ 0.08
Shmt1P50431 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.55■□□□□ 0.08
Shmt1P50431 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Shmt1P50431 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Shmt1P50431 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.55■□□□□ 0.08
Shmt1P50431 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Shmt1P50431 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Shmt1P50431 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Gm18737-201ENSMUST00000173594 937 ntBASIC15.54■□□□□ 0.08
Shmt1P50431 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC15.54■□□□□ 0.08
Shmt1P50431 Gm7063-201ENSMUST00000186840 981 ntBASIC15.54■□□□□ 0.08
Shmt1P50431 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.54■□□□□ 0.08
Shmt1P50431 Olfr286-202ENSMUST00000205305 969 ntBASIC15.54■□□□□ 0.08
Shmt1P50431 Gm5779-201ENSMUST00000218467 910 ntBASIC15.54■□□□□ 0.08
Shmt1P50431 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.54■□□□□ 0.08
Shmt1P50431 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms