Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Gm19863-201ENSMUST00000192480 2218 ntBASIC17.63■□□□□ 0.41
Rfx1P48377 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Rfx1P48377 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.63■□□□□ 0.41
Rfx1P48377 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Rfx1P48377 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC17.62■□□□□ 0.41
Rfx1P48377 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Rfx1P48377 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.62■□□□□ 0.41
Rfx1P48377 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.62■□□□□ 0.41
Rfx1P48377 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.62■□□□□ 0.41
Rfx1P48377 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC17.62■□□□□ 0.41
Rfx1P48377 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx1P48377 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Rfx1P48377 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Rfx1P48377 Gm12644-201ENSMUST00000119935 606 ntBASIC17.61■□□□□ 0.41
Rfx1P48377 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC17.61■□□□□ 0.41
Rfx1P48377 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
Rfx1P48377 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx1P48377 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Mir7071-201ENSMUST00000184847 69 ntBASIC17.6■□□□□ 0.41
Rfx1P48377 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.6■□□□□ 0.41
Rfx1P48377 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
Rfx1P48377 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Rfx1P48377 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx1P48377 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Matn2-206ENSMUST00000228570 2798 ntBASIC17.59■□□□□ 0.41
Rfx1P48377 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms