Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Gm42471-201ENSMUST00000201457 1865 ntBASIC19.18■□□□□ 0.66
Col18a1P39061 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Col18a1P39061 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Col18a1P39061 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col18a1P39061 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col18a1P39061 Gm9124-201ENSMUST00000191789 1092 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 Gm9113-201ENSMUST00000192510 1018 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 Gm9131-201ENSMUST00000193557 1089 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 Gm9121-201ENSMUST00000193749 1071 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Gm8706-201ENSMUST00000197372 1491 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC19.17■□□□□ 0.66
Col18a1P39061 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col18a1P39061 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col18a1P39061 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Col18a1P39061 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC19.16■□□□□ 0.66
Col18a1P39061 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC19.16■□□□□ 0.66
Col18a1P39061 Gm44985-201ENSMUST00000206202 1016 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC19.16■□□□□ 0.66
Col18a1P39061 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Col18a1P39061 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Mir686-201ENSMUST00000102174 109 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Gm13786-201ENSMUST00000122371 333 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col18a1P39061 Gm7029-201ENSMUST00000173226 450 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Gm26927-201ENSMUST00000182385 965 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Ighv1-51-201ENSMUST00000192903 354 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Gm18935-201ENSMUST00000212692 664 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC19.16■□□□□ 0.66
Col18a1P39061 AC102291.3-201ENSMUST00000226566 405 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Mir497b-201ENSMUST00000093601 125 ntBASIC19.16■□□□□ 0.66
Col18a1P39061 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col18a1P39061 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col18a1P39061 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC19.15■□□□□ 0.66
Col18a1P39061 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Col18a1P39061 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col18a1P39061 App-207ENSMUST00000227737 2827 ntBASIC19.15■□□□□ 0.66
Col18a1P39061 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col18a1P39061 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Col18a1P39061 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Col18a1P39061 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Col18a1P39061 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
Col18a1P39061 Gm24420-201ENSMUST00000176676 59 ntBASIC19.14■□□□□ 0.66
Col18a1P39061 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col18a1P39061 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC19.14■□□□□ 0.66
Col18a1P39061 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Col18a1P39061 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Gm42627-201ENSMUST00000197347 224 ntBASIC19.14■□□□□ 0.65
Col18a1P39061 Gm30437-201ENSMUST00000206086 1201 ntBASIC19.14■□□□□ 0.65
Col18a1P39061 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col18a1P39061 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Col18a1P39061 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Col18a1P39061 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC19.14■□□□□ 0.65
Col18a1P39061 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col18a1P39061 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col18a1P39061 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col18a1P39061 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms