Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.53■□□□□ 0.24
Col2a1P28481 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC16.53■□□□□ 0.24
Col2a1P28481 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.53■□□□□ 0.24
Col2a1P28481 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Gm6283-201ENSMUST00000182369 1000 ntBASIC16.53■□□□□ 0.24
Col2a1P28481 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC16.53■□□□□ 0.24
Col2a1P28481 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC16.53■□□□□ 0.24
Col2a1P28481 Gm43438-201ENSMUST00000198133 379 ntBASIC16.53■□□□□ 0.24
Col2a1P28481 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC16.53■□□□□ 0.24
Col2a1P28481 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC16.53■□□□□ 0.24
Col2a1P28481 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col2a1P28481 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Col2a1P28481 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col2a1P28481 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Col2a1P28481 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col2a1P28481 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.52■□□□□ 0.24
Col2a1P28481 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Col2a1P28481 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Gm4804-201ENSMUST00000182234 999 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 Ighv5-13-201ENSMUST00000193550 290 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.52■□□□□ 0.23
Col2a1P28481 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC16.52■□□□□ 0.23
Col2a1P28481 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 AC139350.3-201ENSMUST00000226151 420 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 Gm6180-201ENSMUST00000065243 498 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.52■□□□□ 0.23
Col2a1P28481 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.52■□□□□ 0.23
Col2a1P28481 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col2a1P28481 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
Col2a1P28481 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Col2a1P28481 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Gm18018-201ENSMUST00000198273 408 ntBASIC16.51■□□□□ 0.23
Col2a1P28481 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.51■□□□□ 0.23
Col2a1P28481 AC165157.4-201ENSMUST00000220587 139 ntBASIC16.51■□□□□ 0.23
Col2a1P28481 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.51■□□□□ 0.23
Col2a1P28481 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col2a1P28481 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col2a1P28481 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.5■□□□□ 0.23
Col2a1P28481 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.5■□□□□ 0.23
Col2a1P28481 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.5■□□□□ 0.23
Col2a1P28481 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.5■□□□□ 0.23
Col2a1P28481 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Gm15240-201ENSMUST00000118156 720 ntBASIC16.5■□□□□ 0.23
Col2a1P28481 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC16.5■□□□□ 0.23
Col2a1P28481 Gm37917-201ENSMUST00000194711 392 ntBASIC16.5■□□□□ 0.23
Col2a1P28481 Gm19220-201ENSMUST00000222682 803 ntBASIC16.5■□□□□ 0.23
Col2a1P28481 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.5■□□□□ 0.23
Col2a1P28481 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.5■□□□□ 0.23
Col2a1P28481 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col2a1P28481 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms