Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Gm9797-201ENSMUST00000052902 613 ntBASIC17.25■□□□□ 0.35
Scn11aQ9R053 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Gm15460-201ENSMUST00000118147 391 ntBASIC17.25■□□□□ 0.35
Scn11aQ9R053 Gm12882-201ENSMUST00000121696 517 ntBASIC17.25■□□□□ 0.35
Scn11aQ9R053 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Efs-202ENSMUST00000227037 2540 ntBASIC17.24■□□□□ 0.35
Scn11aQ9R053 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.24■□□□□ 0.35
Scn11aQ9R053 Gm44608-201ENSMUST00000206827 855 ntBASIC17.24■□□□□ 0.35
Scn11aQ9R053 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.24■□□□□ 0.35
Scn11aQ9R053 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn11aQ9R053 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Gm12585-201ENSMUST00000117307 290 ntBASIC17.23■□□□□ 0.35
Scn11aQ9R053 Gm15678-201ENSMUST00000117573 960 ntBASIC17.23■□□□□ 0.35
Scn11aQ9R053 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Gm11425-201ENSMUST00000119608 498 ntBASIC17.23■□□□□ 0.35
Scn11aQ9R053 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Gm28760-201ENSMUST00000185995 736 ntBASIC17.23■□□□□ 0.35
Scn11aQ9R053 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Scn11aQ9R053 Gm9396-201ENSMUST00000076703 567 ntBASIC17.23■□□□□ 0.35
Scn11aQ9R053 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Ssr1-204ENSMUST00000225319 1610 ntBASIC17.22■□□□□ 0.35
Scn11aQ9R053 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC17.22■□□□□ 0.35
Scn11aQ9R053 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms