Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Ccdc40Q8BI79 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Gm43509-201ENSMUST00000196551 2594 ntBASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ccdc40Q8BI79 Gm42829-201ENSMUST00000198417 2585 ntBASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Gm5184-201ENSMUST00000220417 1702 ntBASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Gm6184-201ENSMUST00000120403 1261 ntBASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ccdc40Q8BI79 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ccdc40Q8BI79 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms