Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim56Q80VI1 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim56Q80VI1 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Trim56Q80VI1 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm18737-201ENSMUST00000173594 937 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm38225-201ENSMUST00000194001 393 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 Ighv8-7-201ENSMUST00000194349 297 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm37230-201ENSMUST00000194491 818 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
Trim56Q80VI1 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim56Q80VI1 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Gm29541-201ENSMUST00000191351 678 ntBASIC17.38■□□□□ 0.37
Trim56Q80VI1 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.38■□□□□ 0.37
Trim56Q80VI1 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim56Q80VI1 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Mir449b-201ENSMUST00000104833 80 ntBASIC17.37■□□□□ 0.37
Trim56Q80VI1 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Gm5779-201ENSMUST00000218467 910 ntBASIC17.37■□□□□ 0.37
Trim56Q80VI1 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.37■□□□□ 0.37
Trim56Q80VI1 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim56Q80VI1 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms