Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Cdx2P43241 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Cdx2P43241 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Cdx2P43241 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Gm8749-201ENSMUST00000117737 331 ntBASIC13.96□□□□□ -0.17
Cdx2P43241 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.96□□□□□ -0.17
Cdx2P43241 Gm10766-202ENSMUST00000194123 606 ntBASIC13.96□□□□□ -0.17
Cdx2P43241 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Gm9797-201ENSMUST00000052902 613 ntBASIC13.96□□□□□ -0.17
Cdx2P43241 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Cdx2P43241 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdx2P43241 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Cdx2P43241 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Cdx2P43241 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
Cdx2P43241 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Cdx2P43241 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC13.95□□□□□ -0.18
Cdx2P43241 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.95□□□□□ -0.18
Cdx2P43241 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC13.95□□□□□ -0.18
Cdx2P43241 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Gm21854-201ENSMUST00000179901 471 ntBASIC13.95□□□□□ -0.18
Cdx2P43241 Gm28760-201ENSMUST00000185995 736 ntBASIC13.95□□□□□ -0.18
Cdx2P43241 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.95□□□□□ -0.18
Cdx2P43241 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.95□□□□□ -0.18
Cdx2P43241 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Cdx2P43241 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Cdx2P43241 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdx2P43241 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Gm8602-201ENSMUST00000184045 607 ntBASIC13.94□□□□□ -0.18
Cdx2P43241 Gm31326-201ENSMUST00000191856 1048 ntBASIC13.94□□□□□ -0.18
Cdx2P43241 Gm37230-201ENSMUST00000194491 818 ntBASIC13.94□□□□□ -0.18
Cdx2P43241 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC13.94□□□□□ -0.18
Cdx2P43241 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdx2P43241 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Gm9182-201ENSMUST00000217829 639 ntBASIC13.94□□□□□ -0.18
Cdx2P43241 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdx2P43241 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Mir125a-201ENSMUST00000083545 68 ntBASIC13.94□□□□□ -0.18
Cdx2P43241 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdx2P43241 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdx2P43241 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdx2P43241 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Cdx2P43241 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Cdx2P43241 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC13.93□□□□□ -0.18
Cdx2P43241 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
Cdx2P43241 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Prob1-201ENSMUST00000097619 3021 ntBASIC13.93□□□□□ -0.18
Cdx2P43241 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC13.93□□□□□ -0.18
Cdx2P43241 Gm7820-201ENSMUST00000121012 1052 ntBASIC13.93□□□□□ -0.18
Cdx2P43241 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Cdx2P43241 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cdx2P43241 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC13.93□□□□□ -0.18
Cdx2P43241 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms