Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Gm13884-201ENSMUST00000118103 829 ntBASIC11.95□□□□□ -0.5
Cdx1P18111 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC11.95□□□□□ -0.5
Cdx1P18111 Gm10052-201ENSMUST00000168019 960 ntBASIC11.95□□□□□ -0.5
Cdx1P18111 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC11.95□□□□□ -0.5
Cdx1P18111 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC11.95□□□□□ -0.5
Cdx1P18111 AC108846.1-201ENSMUST00000214531 513 ntBASIC11.95□□□□□ -0.5
Cdx1P18111 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Gm7729-201ENSMUST00000050143 801 ntBASIC11.95□□□□□ -0.5
Cdx1P18111 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Gm42769-201ENSMUST00000198576 1659 ntBASIC11.94□□□□□ -0.5
Cdx1P18111 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Cdx1P18111 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC11.94□□□□□ -0.5
Cdx1P18111 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC11.94□□□□□ -0.5
Cdx1P18111 Rprl3-201ENSMUST00000157400 290 ntBASIC11.94□□□□□ -0.5
Cdx1P18111 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cdx1P18111 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cdx1P18111 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC11.93□□□□□ -0.5
Cdx1P18111 Gm44450-201ENSMUST00000199528 114 ntBASIC11.93□□□□□ -0.5
Cdx1P18111 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Mbnl2-204ENSMUST00000227012 2390 ntBASIC11.93□□□□□ -0.5
Cdx1P18111 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Cdx1P18111 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Gm45203-201ENSMUST00000206384 1831 ntBASIC11.93□□□□□ -0.5
Cdx1P18111 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms